PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017211-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 478aa    MW: 54631.4 Da    PI: 8.2239
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017211-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08410464146
                         TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                         r+ WT+eE++ l+++v+++ +       W++I +       ++Rt+ ++k++w +
  WALNUT_00017211-RA 410 RLFWTAEEEDMLKEGVHKFSTSankniPWRKILEFGRhifhTTRTPVDLKDKWKN 464
                         678*****************99***********9999****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.31E-873130IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-773124IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS01359077120IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS512949.362405470IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-9406469IPR009057Homeodomain-like
SuperFamilySSF466898.97E-11407467IPR009057Homeodomain-like
SMARTSM007171.1E-6409468IPR001005SANT/Myb domain
CDDcd116601.30E-11413466No hitNo description
PfamPF002492.8E-6413465IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MRTKTRLGGR PKPCTSPTAT TNRALPLLHD QPEDFMQTIM HEMSSACNEG LHDDSALNLN  60
EDTVDCMEID SFKERTCIRC NRGGDVLVCR EIGCPIALHE KCVCFKPKFD AFGRFYCPYC  120
SYKRTMVETR QFRKKAMLAK KALLKFVSAN AVGGNGQKLE DSGEAKRKES NVSLPHVRNR  180
NSPDHEKCVW VEDLQDDRFE AHNRVIDELH TNHSIPNACS NVHFREEEIV TEEKSNDVNI  240
SEAHLSDFIE DRERLQAEDA SRMDESQNEG SFEEDEEQAQ PLTTCNSDEV MTVDEGLHAP  300
REGAQDGLEA SAENKGKRDG EHKLQPEAPT SRPKRFKQRA QKKARPQNAG LQRKLSPHKY  360
MTPVKDSRKP NDDVATSKNK KVTASNKSRQ ARESPKKFTK MTFPNVKRKR LFWTAEEEDM  420
LKEGVHKFST SANKNIPWRK ILEFGRHIFH TTRTPVDLKD KWKNMTAKDS STINKESP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.26e-08MYB_related family protein